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Rda For Protein freeware
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Rda For Protein

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Released: November 25, 2012  |  Added: November 25, 2012 | Visits: 437

Protein Data Bank (PDB) File Editor User friendly PDB (Protein Data Bank) file editor with graphic user interface for protein crystallographers to expedite selective parallel edit / data extraction / analysis of their PDB files



Platforms: Windows, Mac, Linux

License: Freeware Size: 731.14 KB Download (29): Protein Data Bank (PDB) File Editor Download

Released: July 03, 2012  |  Added: July 03, 2012 | Visits: 264

Protein Geometry Database The Protein Geometry Database hosts the development code for a flexible database for searching protein geometry, as well as a library for accessing this data for protein modeling & refinement programs.





Platforms: Windows, Mac, Linux

License: Freeware Size: 96.13 KB Download (29): Protein Geometry Database Download

Released: December 01, 2012  |  Added: December 01, 2012 | Visits: 250

protein-ms Tools for mass spectrometry, especially for protein mass spectrometry and proteomics: Quantification tools, converters for Applied Biosystems (Q Star and Q Trap), calculation of in-silico fragmentation spectra, converter for Mascot result files


Platforms: Windows, Mac, Linux

License: Freeware Size: 2.43 MB Download (28): protein-ms Download

Released: November 05, 2012  |  Added: November 05, 2012 | Visits: 262

NOCH NOC is a open source development toolkit and a powerful molecular explorer for protein structure visualizing,analysis,crystallographic mapping, modeling, and refinement, Gromacs/Amber MD trajectories displaying,movie making...


Platforms: Windows, Mac, BSD, Linux

License: Freeware Size: 5.75 MB Download (27): NOCH Download

Released: August 15, 2012  |  Added: August 15, 2012 | Visits: 213

pHMM4weka This Java software implements Profile Hidden Markov Models (PHMMs) for protein classification for the WEKA workbench. Standard PHMMs and newly introduced binary PHMMs are used. In addition the software allows propositionalisation of PHMMs.


Platforms: Windows, Mac, Linux

License: Freeware Size: 6.43 MB Download (27): pHMM4weka Download

Added: September 11, 2013 | Visits: 164

ProDy ProDy is a Python package designed for protein structural dynamics analysis. ProDy is developed by Ahmet Bakan and licensed under the GPLv3. New features and functions are constantly being added to ProDy. The following are the main features that are present and working fine: Protein structure...


Platforms: Mac

License: Freeware Size: 481.28 KB Download (16): ProDy Download

Added: July 09, 2010 | Visits: 1.131

ccextractor ccextractor project is a fast closed captions extractor for MPEG files. ccextractor is mostly a mildly optimized C port of McPoodles excellent but painfully slow Perl script SCC_RIP. It lets you rip the raw closed captions (read: subtitles) data from a number of sources, such as DVD or replay...


Platforms: *nix

License: Freeware Size: 33.79 KB Download (80): ccextractor Download

Released: September 08, 2012  |  Added: September 08, 2012 | Visits: 307

Calories 2 for Mac OS Finally healthy, slender and attractive! You tried thousand and one diet with no success? You want to change your body and your life? Are you looking for an infallible guide? Then Calories 2 is for you! Easy to use software for your daily needs. While others still dream of a slender life, you...


Platforms: Mac

License: Freeware Size: 80 MB Download (54): Calories 2 for Mac OS Download

Released: July 25, 2014  |  Added: November 13, 2014 | Visits: 511

MuscleLite MuscleLite is an easy-to-use bodybuilding diet meal planner. Features of the program: 1) Calculate your daily calorie requirements based on Harris-Benedicts respected scientific formula! 2) Create your simple diet plans for muscle building and fat loss! 3) Estimate your need for...


Platforms: Windows, Windows 8, Windows 7

License: Freeware Size: 4.98 MB Download (71): MuscleLite Download

Added: August 09, 2008 | Visits: 4.037

Diet Watch Spreadsheet This spreadsheet lets you set a personal goal in the number of calories that you want to take in daily. It also let's you set your target percentages for protein, carbohydrate, and fat intake. It comes with a small sample library of foods. But you can enter your own very easily. Note: Requires...


Platforms: Windows

License: Freeware Size: 74 KB Download (351): Diet Watch Spreadsheet Download

Added: January 07, 2010 | Visits: 1.240

Bio::Tools::Run::PiseApplication::consensus Bio::Tools::Run::PiseApplication::consensus is a Perl module. Bioperl class for: CONSENSUS Identification of consensus patterns in unaligned DNA and protein sequences (Hertz, Stormo) References: G.Z. Hertz and G.D. Stormo. Identification of consensus patterns in unaligned DNA and protein...


Platforms: *nix

License: Freeware Size: 829.44 KB Download (76): Bio::Tools::Run::PiseApplication::consensus Download

Added: September 23, 2013 | Visits: 211

ProDy for Linux ProDy is a free and open-source Python package for analyzing protein structural dynamics. It allows for quantitative analysis of heterogeneous experimental structural datasets and comparison with theoretically predicted conformational dynamics. The input for ProDy is the atomic coordinates of...


Platforms: *nix

License: Freeware Size: 727.04 KB Download (18): ProDy for Linux Download

Added: August 25, 2013 | Visits: 214

HOPPscore - Protein Structure Quality HOPPscore is a simple application for evaluating the structural quality of theoretical or experimental protein structures. Protein are evaluated by comparing structure fragments to a reference dictionary of fragments from high resolution structures. Features . Protein Structure Quality...


Platforms: *nix

License: Freeware Size: 2.29 MB Download (16): HOPPscore - Protein Structure Quality Download

Added: December 02, 2013 | Visits: 340

fast5 For Linux Fast5 is a probabilistic file format for the storage of nucleotide and protein sequences based on hdf5.


Platforms: *nix

License: Freeware Size: 40.96 KB Download (18): fast5 For Linux Download

Added: March 27, 2010 | Visits: 1.117

Bio::Tools::Run::TribeMCL Bio::Tools::Run::TribeMCL is a method for clustering proteins into related groups, which are termed protein families. SYNOPSIS use Bio::Tools::Run::TribeMCL; use Bio::SearchIO; # 3 methods to input the blast results # straight forward raw blast output (NCBI or WU-BLAST) my @params =...


Platforms: *nix

License: Freeware Size: 829.44 KB Download (168): Bio::Tools::Run::TribeMCL Download

Added: August 09, 2010 | Visits: 732

StrBio StrBio is a set of Java classes and libraries useful for development of software for computational structural biology research. They are licenced under the LGPL. he strbio.org classes are the basis for several published research projects, including the Pred2ary secondary structure prediction...


Platforms: *nix

License: Freeware Size: 12.7 MB Download (81): StrBio Download

Released: July 13, 2012  |  Added: July 13, 2012 | Visits: 352

TMRPres2D TMRPres2D or TransMembrane protein Re-Presentation in 2 Dimensions for long, is a small, easy to use application designed to automate the creation of uniform, two-dimensional, high analysis graphical images/models of alpha-helical or beta-barrel transmembrane proteins. Protein sequence data and...


Platforms: Windows

License: Freeware Download (47): TMRPres2D Download

Released: August 09, 2012  |  Added: August 09, 2012 | Visits: 301

GRaPe - Gene Reaction Protein Builder GRaPe - a platform-independent software tool for building integrative gene-reaction-protein (GRP) networks. It generates the kinetic equations for each reaction and outputs a SBML document. It also implements two methods for parameter estimation.


Platforms: Windows, Mac, Linux

License: Freeware Size: 3.62 MB Download (27): GRaPe - Gene Reaction Protein Builder Download

Added: April 24, 2013 | Visits: 267

MATLAB Contest Protein This contest concerns a very simplified two-dimensional version of the protein folding problem. Given the amino acid sequence of a simplified protein, your job is to determine a final "optimally folded" configuration. Each potential arrangement of the protein sequence is associated with an energy...


Platforms: Matlab

License: Freeware Size: 10 KB Download (20): MATLAB Contest Protein Download

Added: October 29, 2013 | Visits: 171

UniDPI UniDPI stands for Unified Database of Protein Interactions which gives access to documented interactions in several independent and heterogeneous databases disseminated on the web. As other interactions databases it contains experimental information about protein-protein interactions. However...


Platforms: *nix

License: Freeware Size: 328.79 MB Download (18): UniDPI Download

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